Update gnome-software to 3.22, which among other improvements adds support for Flatpak.
Updates may require up to 24 hours to propagate to mirrors. If the following command doesn't work, please retry later:
sudo dnf upgrade --refresh --advisory=FEDORA-2016-e8b296180e
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|0||0||Test Case Workstation Graphical Upgrade|
|0||2||Test Case desktop update graphical|
|0||1||Test Case desktop update notification|
|0||0||Test Case dnf appstream commandline|
|0||4||Test Case package install remove|
|0||0||Test Case upgrade gnome-software current workstation|
|0||0||Test Case upgrade gnome-software previous workstation|