{"updates": [{"autokarma": true, "autotime": true, "stable_karma": 3, "stable_days": 7, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "Rebuild for Python 3.13 / Fedora 41", "type": "bugfix", "status": "stable", "request": null, "severity": "unspecified", "suggest": "unspecified", "locked": false, "pushed": true, "critpath": false, "critpath_groups": "", "close_bugs": true, "date_submitted": "2024-09-26 20:27:00", "date_modified": null, "date_approved": "2024-10-04 01:44:55", "date_testing": "2024-09-27 01:41:59", "date_stable": "2024-10-05 00:15:27", "alias": "FEDORA-2024-b6ff60f711", "test_gating_status": "ignored", "from_tag": null, "date_pushed": "2024-10-05 00:15:27", "meets_testing_requirements": true, "url": "https://bodhi.stg.fedoraproject.org/updates/FEDORA-2024-b6ff60f711", "title": "arbor-0.9.0-10.fc41", "version_hash": "d47572a4649adcf5f9c2be2707e41bdaef7897fa", "release": {"name": "F41", "long_name": "Fedora 41", "version": "41", "id_prefix": "FEDORA", "branch": "f41", "dist_tag": "f41", "stable_tag": "f41-updates", "testing_tag": "f41-updates-testing", "candidate_tag": "f41-updates-candidate", "pending_signing_tag": "f41-signing-pending", "pending_testing_tag": "f41-updates-testing-pending", "pending_stable_tag": "f41-updates-pending", "override_tag": "f41-override", "mail_template": "fedora_errata_template", "state": "current", "composed_by_bodhi": true, "create_automatic_updates": false, "package_manager": "dnf", "testing_repository": "updates-testing", "released_on": null, "eol": "2025-11-11", "critpath_mandatory_days_in_testing": 14, "mandatory_days_in_testing": 7, "critpath_min_karma": 2, "min_karma": 1, "setting_status": null}, "user": {"name": "gui1ty", "email": "gui1ty@penguinpee.nl", "id": 7243, "avatar": "https://seccdn.libravatar.org/avatar/80809e87c91f24013a9fbff71a6d5aad1a96f9ff7b6d2611a41befad6eb271da?s=24&d=retro", "openid": "gui1ty.id.stg.fedoraproject.org", "groups": [{"name": "packager"}, {"name": "ipausers"}, {"name": "fedora-contributor"}, {"name": "signed_fpca"}, {"name": "fedorabugs"}, {"name": "sysadmin"}, {"name": "neuro-sig"}, {"name": "sysadmin-badges"}, {"name": "trust admins"}]}, "comments": [{"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for testing by gui1ty. ", "timestamp": "2024-09-26 20:27:01", "update_id": 653170, "user_id": 91, "id": 3743976, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update's test gating status has been changed to 'ignored'.", "timestamp": "2024-09-26 20:27:01", "update_id": 653170, "user_id": 91, "id": 3743977, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to testing.", "timestamp": "2024-09-27 01:44:09", "update_id": 653170, "user_id": 91, "id": 3744368, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for stable by bodhi. ", "timestamp": "2024-10-04 01:44:55", "update_id": 653170, "user_id": 91, "id": 3754563, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to stable.", "timestamp": "2024-10-05 00:17:41", "update_id": 653170, "user_id": 91, "id": 3756303, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}], "builds": [{"nvr": "arbor-0.9.0-10.fc41", "signed": true, "release_id": 80, "type": "rpm", "epoch": 0}], "bugs": [{"bug_id": 2300565, "title": "arbor: FTBFS in Fedora rawhide/f41", "security": false, "parent": false, "feedback": []}], "updateid": "FEDORA-2024-b6ff60f711", "karma": 0, "content_type": "rpm", "test_cases": []}, {"autokarma": false, "autotime": true, "stable_karma": 3, "stable_days": 0, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "Automatic update for arbor-0.9.0-10.fc42.\n\n##### **Changelog**\n\n```\n* Wed Jul 17 2024 Fedora Release Engineering - 0.9.0-10\n- Rebuilt for https://fedoraproject.org/wiki/Fedora_41_Mass_Rebuild\n* Mon Jul 15 2024 Sandro - 0.9.0-9\n- Provide Python meta data using macro\n\n```", "type": "unspecified", "status": "stable", "request": null, "severity": "unspecified", "suggest": "unspecified", "locked": false, "pushed": true, "critpath": false, "critpath_groups": "", "close_bugs": true, "date_submitted": "2024-09-26 17:07:29", "date_modified": null, "date_approved": "2024-09-26 17:11:33", "date_testing": "2024-09-26 17:09:36", "date_stable": "2024-09-26 17:11:33", "alias": "FEDORA-2024-2cd08d7651", "test_gating_status": "ignored", "from_tag": null, "date_pushed": "2024-09-26 17:11:33", "meets_testing_requirements": true, "url": "https://bodhi.stg.fedoraproject.org/updates/FEDORA-2024-2cd08d7651", "title": "arbor-0.9.0-10.fc42", "version_hash": "7fce959f0050f02d3831d148c3aa3816d06d7695", "release": {"name": "F42", "long_name": "Fedora 42", "version": "42", "id_prefix": "FEDORA", "branch": "rawhide", "dist_tag": "f42", "stable_tag": "f42", "testing_tag": "f42-updates-testing", "candidate_tag": "f42-updates-candidate", "pending_signing_tag": "f42-signing-pending", "pending_testing_tag": "f42-updates-testing-pending", "pending_stable_tag": "f42-updates-pending", "override_tag": "f42-override", "mail_template": "fedora_errata_template", "state": "pending", "composed_by_bodhi": false, "create_automatic_updates": true, "package_manager": "unspecified", "testing_repository": null, "released_on": null, "eol": null, "critpath_mandatory_days_in_testing": 0, "mandatory_days_in_testing": 0, "critpath_min_karma": 0, "min_karma": 0, "setting_status": "pre_beta"}, "user": {"name": "gui1ty", "email": "gui1ty@penguinpee.nl", "id": 7243, "avatar": "https://seccdn.libravatar.org/avatar/80809e87c91f24013a9fbff71a6d5aad1a96f9ff7b6d2611a41befad6eb271da?s=24&d=retro", "openid": "gui1ty.id.stg.fedoraproject.org", "groups": [{"name": "packager"}, {"name": "ipausers"}, {"name": "fedora-contributor"}, {"name": "signed_fpca"}, {"name": "fedorabugs"}, {"name": "sysadmin"}, {"name": "neuro-sig"}, {"name": "sysadmin-badges"}, {"name": "trust admins"}]}, "comments": [{"karma": 0, "karma_critpath": 0, "text": "This update was automatically created", "timestamp": "2024-09-26 17:07:29", "update_id": 653135, "user_id": 91, "id": 3743827, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update's test gating status has been changed to 'ignored'.", "timestamp": "2024-09-26 17:07:41", "update_id": 653135, "user_id": 91, "id": 3743828, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update's test gating status has been changed to 'waiting'.", "timestamp": "2024-09-26 17:09:36", "update_id": 653135, "user_id": 91, "id": 3743833, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update's test gating status has been changed to 'ignored'.", "timestamp": "2024-09-26 17:09:36", "update_id": 653135, "user_id": 91, "id": 3743834, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for stable by bodhi", "timestamp": "2024-09-26 17:11:33", "update_id": 653135, "user_id": 91, "id": 3743838, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}], "builds": [{"nvr": "arbor-0.9.0-10.fc42", "signed": true, "release_id": 84, "type": "rpm", "epoch": 0}], "bugs": [], "updateid": "FEDORA-2024-2cd08d7651", "karma": 0, "content_type": "rpm", "test_cases": []}, {"autokarma": true, "autotime": true, "stable_karma": 3, "stable_days": 7, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "## Update to 0.9.0\n### v0.9.0\n\n** 2023 08 09 **\n\nAfter much more delay than anticipated, we are very happy to present a new Arbor release. Nearly 8 months of work is in it, much of which focussed on speed, optimisation, fixes and build system changes. This release includes Python 3.12 wheels as probably one of the first packages on PyPI \ud83d\ude04.\n\n#### Major new features\n\n* External Connectivity: Arbor can now interface with other simulators or processes through MPI. Contexts now accept a second MPI communicator and Recipes can implement a ``external_connections_on`` method to specify how simulations might be interacting. [See documentation for more.](https://docs.arbor-sim.org/en/latest/concepts/interconnectivity.html#cross-simulator-interaction)\n* Arbor now supports checkpointing and resume from a previously stored checkpoint. Useful when a certain point in time needs to be explored in multiple directions, when you want to rewind to a previous state, etc. [See documentation for more.](https://docs.arbor-sim.org/en/latest/fileformat/serdes.html)\n* More painted parameters are now scalable through `iexpr`: temperature, capacitance, resistivity, membrane potential and the following ionic parameters: internal and external concentration, diffusivity, and reversal potential. [See documentation.](https://docs.arbor-sim.org/en/latest/concepts/decor.html#scaling-mechanism-and-membrane-parameters)\n* A set of ANN activation functions for NMODL have been added: `sigmoid(x)`, `relu(x)` and `tanh(x)`. Control volume `area` is exposed through NMODL.\n* A revamped backend for ARM CPU's that support Scalable Vector Extension (SVE). Arbor and modcc are now fully compatible, so users who have access to A64FX-based HPC can take full advantage of that hardware.\n\n#### Breaking changes since v0.8.1\n\n* It is no longer possible to set binning and sampling policies, due to Arbor now having a fixed timestep. Removing exact delivery increases the speed of the simulation due to elimination of small steps, makes the numerics independent of presence of sampling, and also leads to a number of code simplifications.\n* Contexts are now constructed kwargs-only. So, `arbor.context(12, None)` is now `arb.context(threads=12, gpu=None)`. In the case no arguments are supplied, the context initialized to `default_allocation`, which means it will use the total number of threads and first GPU that are locally available. `arbor.simulation` constructed without an explicit `arbor.context` also initializes a `default_allocation`.\n* Version bumps:\n * CUDA 11 or higher is required for GPU builds.\n\n**Full Changelog**: https://github.com/arbor-sim/arbor/compare/v0.8.1...v0.9.0\n\n\n### v0.8.1\n\n** 2022 12 22 **\n\nA \ud83c\udf84 holiday release! Not much has changed in a month, but we'd like to share it all the same. Notably, the [Arbor GUI](https://github.com/arbor-sim/gui/) [is co-released](https://github.com/arbor-sim/gui/releases/tag/v0.8) as of Arbor v0.8, and v0.8.1 will be no different.\n\n#### Major new features\n\n- Voltage Processes: add the VOLTAGE_PROCESS mechanism kind to modcc, allowing for direct writing to the membrane voltage (#2033)\n- Spack gpu option: added conditional variant for cuda builds to enable GPU-based random number generation (#2043) \n- SDE Tutorial (#2044) \n\n#### Breaking changes since v0.8\n\n- None \ud83d\udc83!\n\n#### Bug fixed\n\n- Fix ornstein_uhlenbeck example on gpu (#2039)\n- Setting ARB_MODCC was broken and nunfunctional. Fixed. (#2029)\n- The `--cxx` flag in `arbor-build-catalogue` is now properly used; falls back to `c++`. (#2051)\n\n### v0.8\n\n** 2022 11 15 **\n\nWelcome to another installment of the Arbor simulator!\n\nIn this release we add a CHANGELOG, where major new features and breaking changes will be mentioned specifically.\n\n#### Major new features\n\n- Stochastic Differential Equations. Introduces sources of white noise to arbor (and nmodl). Both point and density mechanisms may now use white noise as part of the state updates, turning the ODEs effectively into SDEs. The noise sources are provided per connection end point (point mech.) or control volume (density mech.) and are uncorrelated (spatially, temporally and across different mechanism instantiations). https://github.com/arbor-sim/arbor/pull/1884\n- Mutable connection table. Add functionality, docs, and examples on editing the connection table. This is a first, small PR\non the topic, further functionality will come as requested. https://github.com/arbor-sim/arbor/pull/1919\n- Allow editing morphologies. Supported operations: join_at, split_at, equivalence, equality, apply isometry. https://github.com/arbor-sim/arbor/pull/1957\n- Arbor cable cell exporter and backend support in BluePyOpt. https://github.com/arbor-sim/arbor/pull/1959\n- Make LIF cells probeable. https://github.com/arbor-sim/arbor/pull/2021\n\n#### Breaking changes since v0.7:\n\n- A change in decor API: `arbor.cable_cell` has the labels and decor arguments swapped. I.e.: `(tree, labels, decor)`\n-> `(tree, decor, label)`. Labels are now optional. https://github.com/arbor-sim/arbor/pull/1978\n- Remove the `generate-catalogue` script. `modcc` accepts now a list of NMODL files and is able to spit out a catalogue.cpp file. https://github.com/arbor-sim/arbor/pull/1975\n- Mechanism ABI version is bumped to 0.3.1. https://github.com/arbor-sim/arbor/pull/1884\n- Rename spike detector -> threshold detector. https://github.com/arbor-sim/arbor/pull/1976\n- Remove access to time `t` in NMODL. https://github.com/arbor-sim/arbor/pull/1967\n- Major dependency version bumps:\n - GCC: 9 and up\n - CUDA: 11 and up\n - Clang: 10 and up\n\n**Full Changelog**: https://github.com/arbor-sim/arbor/compare/v0.7...v0.8-rc\n", "type": "enhancement", "status": "stable", "request": null, "severity": "unspecified", "suggest": "unspecified", "locked": false, "pushed": true, "critpath": false, "critpath_groups": "", "close_bugs": true, "date_submitted": "2024-05-17 12:28:45", "date_modified": null, "date_approved": "2024-05-25 02:47:21", "date_testing": "2024-05-18 02:45:24", "date_stable": "2024-05-26 01:01:29", "alias": "FEDORA-2024-372f6b5a52", "test_gating_status": "ignored", "from_tag": null, "date_pushed": "2024-05-26 01:01:29", "meets_testing_requirements": true, "url": "https://bodhi.stg.fedoraproject.org/updates/FEDORA-2024-372f6b5a52", "title": "arbor-0.9.0-7.fc39", "version_hash": "60b09d3da0564ee53821048ea771c0c46075a350", "release": {"name": "F39", "long_name": "Fedora 39", "version": "39", "id_prefix": "FEDORA", "branch": "f39", "dist_tag": "f39", "stable_tag": "f39-updates", "testing_tag": "f39-updates-testing", "candidate_tag": "f39-updates-candidate", "pending_signing_tag": "f39-signing-pending", "pending_testing_tag": "f39-updates-testing-pending", "pending_stable_tag": "f39-updates-pending", "override_tag": "f39-override", "mail_template": "fedora_errata_template", "state": "current", "composed_by_bodhi": true, "create_automatic_updates": false, "package_manager": "dnf", "testing_repository": "updates-testing", "released_on": null, "eol": "2024-11-26", "critpath_mandatory_days_in_testing": 14, "mandatory_days_in_testing": 7, "critpath_min_karma": 2, "min_karma": 1, "setting_status": null}, "user": {"name": "gui1ty", "email": "gui1ty@penguinpee.nl", "id": 7243, "avatar": "https://seccdn.libravatar.org/avatar/80809e87c91f24013a9fbff71a6d5aad1a96f9ff7b6d2611a41befad6eb271da?s=24&d=retro", "openid": "gui1ty.id.stg.fedoraproject.org", "groups": [{"name": "packager"}, {"name": "ipausers"}, {"name": "fedora-contributor"}, {"name": "signed_fpca"}, {"name": "fedorabugs"}, {"name": "sysadmin"}, {"name": "neuro-sig"}, {"name": "sysadmin-badges"}, {"name": "trust admins"}]}, "comments": [{"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for testing by gui1ty. ", "timestamp": "2024-05-17 12:28:45", "update_id": 611519, "user_id": 91, "id": 3528000, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update's test gating status has been changed to 'ignored'.", "timestamp": "2024-05-17 12:28:45", "update_id": 611519, "user_id": 91, "id": 3528001, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to testing.", "timestamp": "2024-05-18 02:45:59", "update_id": 611519, "user_id": 91, "id": 3528910, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for stable by bodhi. ", "timestamp": "2024-05-25 02:47:21", "update_id": 611519, "user_id": 91, "id": 3536464, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to stable.", "timestamp": "2024-05-26 01:02:11", "update_id": 611519, "user_id": 91, "id": 3537008, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}], "builds": [{"nvr": "arbor-0.9.0-7.fc39", "signed": true, "release_id": 70, "type": "rpm", "epoch": 0}], "bugs": [{"bug_id": 2145131, "title": "arbor-0.9.0 is available", "security": false, "parent": false, "feedback": []}], "updateid": "FEDORA-2024-372f6b5a52", "karma": 0, "content_type": "rpm", "test_cases": []}, {"autokarma": true, "autotime": true, "stable_karma": 3, "stable_days": 7, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "## Update to 0.9.0\n### v0.9.0\n\n** 2023 08 09 **\n\nAfter much more delay than anticipated, we are very happy to present a new Arbor release. Nearly 8 months of work is in it, much of which focussed on speed, optimisation, fixes and build system changes. This release includes Python 3.12 wheels as probably one of the first packages on PyPI \ud83d\ude04.\n\n#### Major new features\n\n* External Connectivity: Arbor can now interface with other simulators or processes through MPI. Contexts now accept a second MPI communicator and Recipes can implement a ``external_connections_on`` method to specify how simulations might be interacting. [See documentation for more.](https://docs.arbor-sim.org/en/latest/concepts/interconnectivity.html#cross-simulator-interaction)\n* Arbor now supports checkpointing and resume from a previously stored checkpoint. Useful when a certain point in time needs to be explored in multiple directions, when you want to rewind to a previous state, etc. [See documentation for more.](https://docs.arbor-sim.org/en/latest/fileformat/serdes.html)\n* More painted parameters are now scalable through `iexpr`: temperature, capacitance, resistivity, membrane potential and the following ionic parameters: internal and external concentration, diffusivity, and reversal potential. [See documentation.](https://docs.arbor-sim.org/en/latest/concepts/decor.html#scaling-mechanism-and-membrane-parameters)\n* A set of ANN activation functions for NMODL have been added: `sigmoid(x)`, `relu(x)` and `tanh(x)`. Control volume `area` is exposed through NMODL.\n* A revamped backend for ARM CPU's that support Scalable Vector Extension (SVE). Arbor and modcc are now fully compatible, so users who have access to A64FX-based HPC can take full advantage of that hardware.\n\n#### Breaking changes since v0.8.1\n\n* It is no longer possible to set binning and sampling policies, due to Arbor now having a fixed timestep. Removing exact delivery increases the speed of the simulation due to elimination of small steps, makes the numerics independent of presence of sampling, and also leads to a number of code simplifications.\n* Contexts are now constructed kwargs-only. So, `arbor.context(12, None)` is now `arb.context(threads=12, gpu=None)`. In the case no arguments are supplied, the context initialized to `default_allocation`, which means it will use the total number of threads and first GPU that are locally available. `arbor.simulation` constructed without an explicit `arbor.context` also initializes a `default_allocation`.\n* Version bumps:\n * CUDA 11 or higher is required for GPU builds.\n\n**Full Changelog**: https://github.com/arbor-sim/arbor/compare/v0.8.1...v0.9.0\n\n\n### v0.8.1\n\n** 2022 12 22 **\n\nA \ud83c\udf84 holiday release! Not much has changed in a month, but we'd like to share it all the same. Notably, the [Arbor GUI](https://github.com/arbor-sim/gui/) [is co-released](https://github.com/arbor-sim/gui/releases/tag/v0.8) as of Arbor v0.8, and v0.8.1 will be no different.\n\n#### Major new features\n\n- Voltage Processes: add the VOLTAGE_PROCESS mechanism kind to modcc, allowing for direct writing to the membrane voltage (#2033)\n- Spack gpu option: added conditional variant for cuda builds to enable GPU-based random number generation (#2043) \n- SDE Tutorial (#2044) \n\n#### Breaking changes since v0.8\n\n- None \ud83d\udc83!\n\n#### Bug fixed\n\n- Fix ornstein_uhlenbeck example on gpu (#2039)\n- Setting ARB_MODCC was broken and nunfunctional. Fixed. (#2029)\n- The `--cxx` flag in `arbor-build-catalogue` is now properly used; falls back to `c++`. (#2051)\n\n### v0.8\n\n** 2022 11 15 **\n\nWelcome to another installment of the Arbor simulator!\n\nIn this release we add a CHANGELOG, where major new features and breaking changes will be mentioned specifically.\n\n#### Major new features\n\n- Stochastic Differential Equations. Introduces sources of white noise to arbor (and nmodl). Both point and density mechanisms may now use white noise as part of the state updates, turning the ODEs effectively into SDEs. The noise sources are provided per connection end point (point mech.) or control volume (density mech.) and are uncorrelated (spatially, temporally and across different mechanism instantiations). https://github.com/arbor-sim/arbor/pull/1884\n- Mutable connection table. Add functionality, docs, and examples on editing the connection table. This is a first, small PR\non the topic, further functionality will come as requested. https://github.com/arbor-sim/arbor/pull/1919\n- Allow editing morphologies. Supported operations: join_at, split_at, equivalence, equality, apply isometry. https://github.com/arbor-sim/arbor/pull/1957\n- Arbor cable cell exporter and backend support in BluePyOpt. https://github.com/arbor-sim/arbor/pull/1959\n- Make LIF cells probeable. https://github.com/arbor-sim/arbor/pull/2021\n\n#### Breaking changes since v0.7:\n\n- A change in decor API: `arbor.cable_cell` has the labels and decor arguments swapped. I.e.: `(tree, labels, decor)`\n-> `(tree, decor, label)`. Labels are now optional. https://github.com/arbor-sim/arbor/pull/1978\n- Remove the `generate-catalogue` script. `modcc` accepts now a list of NMODL files and is able to spit out a catalogue.cpp file. https://github.com/arbor-sim/arbor/pull/1975\n- Mechanism ABI version is bumped to 0.3.1. https://github.com/arbor-sim/arbor/pull/1884\n- Rename spike detector -> threshold detector. https://github.com/arbor-sim/arbor/pull/1976\n- Remove access to time `t` in NMODL. https://github.com/arbor-sim/arbor/pull/1967\n- Major dependency version bumps:\n - GCC: 9 and up\n - CUDA: 11 and up\n - Clang: 10 and up\n\n**Full Changelog**: https://github.com/arbor-sim/arbor/compare/v0.7...v0.8-rc\n", "type": "enhancement", "status": "stable", "request": null, "severity": "unspecified", "suggest": "unspecified", "locked": false, "pushed": true, "critpath": false, "critpath_groups": "", "close_bugs": true, "date_submitted": "2024-05-17 12:28:44", "date_modified": null, "date_approved": "2024-05-25 02:23:20", "date_testing": "2024-05-18 02:22:23", "date_stable": "2024-05-26 01:25:15", "alias": "FEDORA-2024-7561938eea", "test_gating_status": "ignored", "from_tag": null, "date_pushed": "2024-05-26 01:25:15", "meets_testing_requirements": true, "url": "https://bodhi.stg.fedoraproject.org/updates/FEDORA-2024-7561938eea", "title": "arbor-0.9.0-7.fc40", "version_hash": "7364e6348e91cb4e8dd662d161fcbb753c04f76e", "release": {"name": "F40", "long_name": "Fedora 40", "version": "40", "id_prefix": "FEDORA", "branch": "f40", "dist_tag": "f40", "stable_tag": "f40-updates", "testing_tag": "f40-updates-testing", "candidate_tag": "f40-updates-candidate", "pending_signing_tag": "f40-signing-pending", "pending_testing_tag": "f40-updates-testing-pending", "pending_stable_tag": "f40-updates-pending", "override_tag": "f40-override", "mail_template": "fedora_errata_template", "state": "current", "composed_by_bodhi": true, "create_automatic_updates": false, "package_manager": "dnf", "testing_repository": "updates-testing", "released_on": null, "eol": "2025-05-13", "critpath_mandatory_days_in_testing": 14, "mandatory_days_in_testing": 7, "critpath_min_karma": 2, "min_karma": 1, "setting_status": null}, "user": {"name": "gui1ty", "email": "gui1ty@penguinpee.nl", "id": 7243, "avatar": "https://seccdn.libravatar.org/avatar/80809e87c91f24013a9fbff71a6d5aad1a96f9ff7b6d2611a41befad6eb271da?s=24&d=retro", "openid": "gui1ty.id.stg.fedoraproject.org", "groups": [{"name": "packager"}, {"name": "ipausers"}, {"name": "fedora-contributor"}, {"name": "signed_fpca"}, {"name": "fedorabugs"}, {"name": "sysadmin"}, {"name": "neuro-sig"}, {"name": "sysadmin-badges"}, {"name": "trust admins"}]}, "comments": [{"karma": 0, "karma_critpath": 0, "text": "This update has been submitted for testing by gui1ty. 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", "timestamp": "2024-05-25 02:23:20", "update_id": 611518, "user_id": 91, "id": 3536401, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to stable.", "timestamp": "2024-05-26 01:26:43", "update_id": 611518, "user_id": 91, "id": 3537072, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}], "builds": [{"nvr": "arbor-0.9.0-7.fc40", "signed": true, "release_id": 76, "type": "rpm", "epoch": 0}], "bugs": [{"bug_id": 2145131, "title": "arbor-0.9.0 is available", "security": false, "parent": false, "feedback": []}], "updateid": "FEDORA-2024-7561938eea", "karma": 0, "content_type": "rpm", "test_cases": []}, {"autokarma": false, "autotime": true, "stable_karma": 3, "stable_days": 0, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "Automatic update for arbor-0.9.0-7.fc41.\n\n##### **Changelog**\n\n```\n* Tue Feb 6 2024 Sandro - 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", "timestamp": "2021-10-05 01:17:22", "update_id": 343732, "user_id": 91, "id": 2233624, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}, {"karma": 0, "karma_critpath": 0, "text": "This update has been pushed to stable.", "timestamp": "2021-10-05 16:17:36", "update_id": 343732, "user_id": 91, "id": 2235073, "bug_feedback": [], "testcase_feedback": [], "user": {"name": "bodhi", "email": null, "id": 91, "avatar": "https://apps.fedoraproject.org/img/icons/bodhi-24.png", "openid": "bodhi.id.stg.fedoraproject.org", "groups": []}}], "builds": [{"nvr": "arbor-0.5.2-4.fc34", "signed": true, "release_id": 47, "type": "rpm", "epoch": 0}], "bugs": [{"bug_id": 1806306, "title": "arbor requires Random123 which does not support s390x", "security": false, "parent": false, "feedback": []}, {"bug_id": 1974843, "title": "arbor-0.5.2 is available", "security": false, "parent": false, "feedback": []}, {"bug_id": 1977305, "title": "arbor fails to build with Sphinx 4.0.2", "security": false, "parent": false, "feedback": []}], "updateid": "FEDORA-2021-afabaa7b16", "karma": 0, "content_type": "rpm", "test_cases": []}, {"autokarma": false, "autotime": true, "stable_karma": 3, "stable_days": 0, "unstable_karma": -3, "require_bugs": false, "require_testcases": false, "display_name": "", "notes": "Automatic update for arbor-0.5.2-4.fc36.\n\n##### **Changelog**\n\n```\n* Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-4\n- chore: remove second unneeded patch\n* Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-3\n- feat: correct flags for s390 builds\n* Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-2\n- chore: remove unused patch\n* Sat Sep 25 2021 Ankur Sinha (Ankur Sinha Gmail) 0.5.2-1\n- feat: update to 0.5.2\n* Wed Jul 21 2021 Fedora Release Engineering 0.3-13\n- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild\n* Wed Jul 21 2021 Fedora Release Engineering 0.3-12\n- Rebuilt for https://fedoraproject.org/wiki/Fedora_35_Mass_Rebuild\n\n```", "type": "unspecified", "status": "stable", "request": null, "severity": "unspecified", "suggest": "unspecified", "locked": false, "pushed": true, "critpath": false, "critpath_groups": null, "close_bugs": true, "date_submitted": "2021-09-26 08:40:46", "date_modified": null, "date_approved": null, "date_testing": "2021-09-26 08:41:22", "date_stable": "2021-09-26 08:42:16", "alias": "FEDORA-2021-359efcbae5", "test_gating_status": "ignored", "from_tag": null, "date_pushed": "2021-09-26 08:42:16", "meets_testing_requirements": true, "url": "https://bodhi.stg.fedoraproject.org/updates/FEDORA-2021-359efcbae5", "title": "arbor-0.5.2-4.fc36", "version_hash": "a9b5c3c4652ebccbd98a4206d834c97aed165fe4", "release": {"name": "F36", "long_name": "Fedora 36", "version": "36", "id_prefix": "FEDORA", "branch": "f36", 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