I never had the issue with colord, so I can't comment on that, but these denials
SELinux is preventing gnome-shell from map access on the file /var/lib/flatpak/exports/share/icons/hicolor/icon-theme.cache SELinux is preventing dbus-daemon from read access on the lnk_file /var/lib/flatpak/exports/share/dbus-1/services/org.gnome.Extensions.service
are now gone.
I'm having trouble updating, even with --skip-broken, I get this: Error: Transaction test error: file /usr/lib64/avogadro2/scripts from install of avogadro2-libs-1.93.0-1.fc31.x86_64 conflicts with file from package avogadro2-libs-1.91.0-4.fc31.x86_64
Works for me.